STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilXType IV minor pilin protein PilX. (153 aa)    
Predicted Functional Partners:
pilW
Type IV minor pilin protein PilW.
  
  
 0.996
pilV
Type IV pilin modification protein PilV.
  
  
 0.996
pilY
Type IV pili system adhesin PilY.
  
  
 0.958
fimT
Type IV minor pilin protein FimT.
  
  
 0.957
pilE
Type IV minor pilin protein PilE.
  
  
 0.944
fimU
Type IV pilus biogenesis protein FimU.
  
  
 0.876
gspH
T2aSS secretion system pseudopilus protein GspH.
     
 0.803
gspK
T2aSS secretion system pseudopilus protein GspK.
      
 0.796
SO_3523
Type IV pilin system protein.
  
    0.775
SO_0851
PilD processed protein.
  
  
 0.671
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.