STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilXType IV minor pilin protein PilX. (153 aa)    
Predicted Functional Partners:
pilW
Type IV minor pilin protein PilW.
  
  
 0.993
pilV
Type IV pilin modification protein PilV.
  
  
 0.991
pilY
Type IV pili system adhesin PilY.
  
  
 0.951
pilE
Type IV minor pilin protein PilE.
  
  
 0.932
fimT
Type IV minor pilin protein FimT.
  
  
 0.896
fimU
Type IV pilus biogenesis protein FimU.
  
  
 0.798
SO_3523
Type IV pilin system protein.
  
    0.774
SO_0851
PilD processed protein.
  
  
 0.752
gspK
T2aSS secretion system pseudopilus protein GspK.
      
 0.738
SO_0852
PilD processed protein.
  
  
 0.733
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.