STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3539Peptidase M28D family. (468 aa)    
Predicted Functional Partners:
SO_2494
Peptidase family M2.
 
   
 0.709
SO_1822
TonB-dependent receptor.
  
     0.678
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
  
    0.659
SO_2766
Peptidase M28A family.
  
    0.645
SO_2427
ArgR-regulated TonB-dependent receptor.
  
     0.542
hlyU
Transcriptional activator HlyU.
       0.530
SO_1997
Cold-active zinc metallopeptidase M1 family.
  
 
 0.508
SO_0002
Glutathione uptake transporter.
 
   0.504
SO_1561
Cytoplasmic zinc metallopeptidase M1 family.
  
 
 0.487
SO_4732
Lipoprotein of unknown function DUF885.
  
    0.481
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.