Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3539Peptidase M28D family. (468 aa)    
Predicted Functional Partners:
SO_2494
Peptidase family M2.
 
     0.704
SO_1822
TonB-dependent receptor.
  
     0.678
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
  
     0.658
SO_2766
Peptidase M28A family.
  
     0.645
trpA
Tryptophan synthase alpha subunit TrpA; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
      
 0.546
SO_2427
ArgR-regulated TonB-dependent receptor.
  
     0.542
hlyU
Transcriptional activator HlyU.
       0.530
SO_1997
Cold-active zinc metallopeptidase M1 family.
  
 
 0.514
SO_1561
Cytoplasmic zinc metallopeptidase M1 family.
  
 
 0.489
SO_1751
ABC-type transport system bifunctional permease and peptidase M1 family component.
  
 
 
 0.486
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.