STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3549Hemerythrin. (178 aa)    
Predicted Functional Partners:
SO_1412
Outer membrane beta barrel protein.
      
 0.735
SO_3298
Outer membrane beta barrel protein.
      
 0.735
ompW
Outer membrane protein OmpW.
   
  
 0.519
SO_1618
Protein of unknown function DUF3549.
  
     0.518
SO_0588
Small conductance mechanosensitive ion channel protein MscS family.
  
     0.448
SO_3550
Anti-sigma factor.
       0.436
SO_3551
RNA polymerase sigma-70 factor ECF subfamily.
       0.436
SO_3280
Protein of unknown function DUF465.
  
     0.421
pilP
PilQ chaperone PilP.
  
     0.411
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
   
 0.406
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.