Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mipAOuter membrane MltA-interaction protein MipA. (287 aa)    
Predicted Functional Partners:
rstB
Two component signal transduction system histidine kinase RstB.
 
     0.872
SO_3593
Protein of unknown function DUF3019.
  
    0.836
rstA
Two component signal transduction system controlling curli production response regulator RstA.
 
     0.827
cga
Glucan 14-alpha-glucosidase Cga.
  
     0.591
SO_3513
Flavin-dependent tryptophan halogenase.
 
     0.556
SO_3514
TonB-dependent chitooligosaccharide receptor.
  
    0.438
nagR
Transcriptional repressor of N-acetylglucosamine utilization NagR.
  
    0.417
cheC-2
Chemotaxis signal transduction system inhibitor of MCP methylation CheC.
  
    0.416
malR
Transcriptional repressor of maltodextrose utilization MalR.
  
     0.412
SO_3591
Predicted periplasmic protein.
  
    0.411
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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