rplU protein (Shewanella oneidensis) - STRING interaction network

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rplU

50S ribosomal protein L21 RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)

Predicted Functional Partners:

rpmA

0.999

rpmG

0.999

rpmB

0.999

rpsL

0.998

rplS

0.998

rplM

0.998

rplT

0.997

rpsT

0.997

rplK

0.996

rpsU

0.996

Your Current Organism:

Shewanella oneidensis

NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplK	rplM	SO_0220	SO_3940	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplK	rplS	SO_0220	SO_1360	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L19 RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.997
rplK	rplT	SO_0220	SO_2302	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L20 RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplK	rplU	SO_0220	SO_3652	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L21 RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplK	rpmA	SO_0220	SO_3651	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L27 RpmA; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplK	rpmB	SO_0220	SO_4247	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.	0.993
rplK	rpmG	SO_0220	SO_4246	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L33 RpmG; Belongs to the bacterial ribosomal protein bL33 family.	0.992
rplK	rpsL	SO_0220	SO_0226	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S12p RpsL; With S4 and S5 plays an important role in translational accuracy.	0.999
rplK	rpsT	SO_0220	SO_3537	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S20 RpsT; Binds directly to 16S ribosomal RNA.	0.989
rplK	rpsU	SO_0220	SO_1288	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S21 RpsU; Belongs to the bacterial ribosomal protein bS21 family.	0.977
rplM	rplK	SO_3940	SO_0220	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
rplM	rplS	SO_3940	SO_1360	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19 RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplM	rplT	SO_3940	SO_2302	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L20 RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplM	rplU	SO_3940	SO_3652	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21 RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplM	rpmA	SO_3940	SO_3651	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27 RpmA; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplM	rpmB	SO_3940	SO_4247	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplM	rpmG	SO_3940	SO_4246	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L33 RpmG; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplM	rpsL	SO_3940	SO_0226	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S12p RpsL; With S4 and S5 plays an important role in translational accuracy.	0.999
rplM	rpsT	SO_3940	SO_3537	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20 RpsT; Binds directly to 16S ribosomal RNA.	0.996
rplM	rpsU	SO_3940	SO_1288	50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S21 RpsU; Belongs to the bacterial ribosomal protein bS21 family.	0.993

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