Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3656Protein of unknown function DUF3144. (105 aa)    
Predicted Functional Partners:
SO_3660
Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.
      
 0.959
SO_3662
Inner membrane 4Fe-4S ferredoxin.
      
 0.958
SO_3665
ABC-type multidrug eflux system bifunctional ATPase and permease component.
      
 0.872
cysT
ABC-type sulfate/thiosulfate uptake system permease component 1 CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
      
 0.798
phyH
phytanoyl-CoA dioxygenase PhyH.
      
 0.752
SO_0400
Putative quinol monooxygenase.
      
 0.668
SO_0841
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
      
 0.668
SO_0181
Uncharacterized protein.
      
 0.666
SO_3655
PilD processed protein.
       0.570
fre
NAD(P)H-flavin reductase Fre.
   
    0.442
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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