Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3665ABC-type multidrug eflux system bifunctional ATPase and permease component. (595 aa)    
Predicted Functional Partners:
SO_3656
Protein of unknown function DUF3144.
      
 0.872
SO_3660
Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family.
      
 0.804
SO_3662
Inner membrane 4Fe-4S ferredoxin.
   
  
 0.803
hyaD
NiFe hydrogenase maturation protease HyaD.
      
 0.665
fdhC-2
Fnr-inducible formate dehydrogenase cytochrome b subunit FdhC.
      
 0.663
fdhA-2
Fnr-inducilble formate dehydrogenase molybdopterin-binding subunit FdhA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.661
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
 
 
 0.599
lpxK
Tetraacyldisaccharide 4'-kinase LpxK; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
    
 0.598
atmA
ABC-type Ni2+/Co2+ export system bifunctional ATPase and permease components AtmA.
  
 
0.577
SO_3611
AAA ATPase family protein.
 
 0.549
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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