Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hmuATonB-dependent heme/hemoglobin receptor HmuA. (697 aa)    
Predicted Functional Partners:
hmuZ
FMN binding heme iron utilization protein HmuZ.
  
  
 0.976
hmuX
Heme iron utilization protein HmuX.
 
  
 0.962
tonB
TonB1 energy transduction system for heme uptake energy transducer component TonB.
 
 
 0.880
hmuB
ABC-type hemin uptake system substrate-binding component HmuB.
  
 0.857
SO_3406
Putative siderophore transporter component 1.
  
    0.854
exbB-2
TonB1 energy transduction system for heme uptake inner membrane component ExbB.
 
  
 0.828
SO_3344
Predicted inner membrane protein.
   
  
 0.818
pubB
N-hydroxyputrescine-succinyl CoA transferase PubB.
   
  
 0.817
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.807
pubC
NTP-dependent putrebactin synthetase PubC.
   
  
 0.789
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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