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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3676Protein of unknown function DUF2956. (113 aa)    
Predicted Functional Partners:
hmuD
ABC-type hemin uptake system ATPase component HmuD; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
    0.638
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.612
hmuB
ABC-type hemin uptake system substrate-binding component HmuB.
  
    0.576
SO_1694
FAD-binding protein.
   
    0.516
SO_3062
Predicted inner membrane protein.
   
    0.516
exbB-2
TonB1 energy transduction system for heme uptake inner membrane component ExbB.
  
    0.441
exbD-2
TonB1 energy transduction system for heme uptake inner membrane component ExbD.
  
    0.433
ctaA
Heme A synthase CtaA.
   
    0.418
yheT
Peptidase S33 family YheT.
   
    0.410
SO_4524
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.