Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3677Uncharacterized protein. (122 aa)    
Predicted Functional Partners:
SO_3678
FAD-dependent oxidoreductase.
  
    0.552
SO_3679
Protein of unknown function DUF2131.
  
    0.537
SO_2978
Lambda phage integrase; Belongs to the 'phage' integrase family.
   
    0.511
tnpA-7
Mu phage transposase OrfA TnpA_MuSo1a.
   
    0.442
SO_2982
Lambda phage uncharacterized protein.
   
    0.429
SO_0645
Mu phage uncharacterized protein.
   
    0.421
SO_0682
Mu phage uncharacterized protein.
   
    0.421
SO_4154
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.413
SO_3009
Lambda phage uncharacterized protein.
   
    0.404
SO_3680
Universal stress protein family.
  
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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