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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calBConiferyl aldehyde dehydrogenase CalB; Belongs to the aldehyde dehydrogenase family. (474 aa)    
Predicted Functional Partners:
calR
Transcriptional repressor of aromatic compound utilization CalR.
 
  
 0.908
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
  
 
 0.688
galE
UDP-glucose 4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
   
 
 0.668
adhB
Alcohol dehydrogenase II AdhB.
 
 
 0.656
puuE
GABA aminotransferase PLP-dependent PuuE; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.620
deoR
Nucleoside-responsive transcriptional activator of nucleoside utilization DeoR.
    
 
 0.586
pnuR
Transcriptional activator of nicotinamideribose utilization PnuR.
    
 
 0.586
azrR
Superoxide-responsive transcriptional repressor of superoxide stress response AzrR.
      
 0.569
galK
Galactokinase GalK; Belongs to the GHMP kinase family. GalK subfamily.
   
  
 0.536
ohrA
Peroxiredoxin OhrA.
 
      0.513
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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