STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgFCurli secretion apparatus component CsgF. (131 aa)    
Predicted Functional Partners:
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
 
 
 0.999
csgE
Curli secretion apparatus substrate specificity factor CsgE.
  
  
 0.998
csgA
Major curlin subunit CsgA.
 
  
 0.980
csgB
Minor curlin subunit CsgB.
 
  
 0.964
csgD
Transcriptional activator of curli operon CsgD.
 
  
 0.961
flgT
Flagella assembly protein FlgT.
  
 
 0.909
SO_2725
Transcriptional regulator LuxR family.
  
  
 0.800
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
    0.645
asnS
asparaginyl-tRNA synthetase AsnS.
      
 0.509
folX
D-erythro-78-dihydroneopterin triphosphate epimerase FolX.
  
     0.446
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.