Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csgFCurli secretion apparatus component CsgF. (131 aa)    
Predicted Functional Partners:
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
 
 
 0.999
csgE
Curli secretion apparatus substrate specificity factor CsgE.
  
  
 0.999
csgA
Major curlin subunit CsgA.
 
  
 0.986
csgD
Transcriptional activator of curli operon CsgD.
 
  
 0.980
csgB
Minor curlin subunit CsgB.
 
  
 0.969
flgT
Flagella assembly protein FlgT.
  
 
 0.905
SO_2725
Transcriptional regulator LuxR family.
  
  
 0.889
yaeB
Putative methyltransferase YaeB.
      
 0.669
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
    0.643
folX
D-erythro-78-dihydroneopterin triphosphate epimerase FolX.
  
     0.446
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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