close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgECurli secretion apparatus substrate specificity factor CsgE. (135 aa)    
Predicted Functional Partners:
csgF
Curli secretion apparatus component CsgF.
  
  
 0.998
csgG
Curli secretion apparatus outer membrane lipoprotein component CsgG.
  
 
 0.997
csgA
Major curlin subunit CsgA.
  
  
 0.894
flgT
Flagella assembly protein FlgT.
  
 
 0.871
csgD
Transcriptional activator of curli operon CsgD.
  
  
 0.800
csgB
Minor curlin subunit CsgB.
  
  
 0.771
asnS
asparaginyl-tRNA synthetase AsnS.
      
 0.508
SO_3688
Two component signal transduction system histidine kinase.
  
    0.427
SO_4149
Secreted VCBS domain protein.
   
  
 0.401
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.