Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3688Two component signal transduction system histidine kinase. (555 aa)    
Predicted Functional Partners:
SO_3689
Two component signal transduction system Sigma54-dependent response regulator Fis family.
 
 
 
 0.865
SO_3694
ABC-type macrolide family export system MFP component.
 
     0.843
SO_3691
ABC-type macrolide family export system permease component 2.
 
     0.820
SO_3692
ABC-type macrolide family export system ATPase component.
 
    0.745
SO_3690
ABC-type macrolide family export system permease component 1.
 
     0.723
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
 
 
 
 0.681
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.562
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 
 
 0.551
SO_2570
DUF885 family lipoprotein.
  
     0.521
phoP
Two component signal transduction system response regulator PhoP.
  
 
 
 0.508
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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