Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3692ABC-type macrolide family export system ATPase component. (246 aa)    
Predicted Functional Partners:
SO_3691
ABC-type macrolide family export system permease component 2.
 
 0.998
SO_3690
ABC-type macrolide family export system permease component 1.
 
 0.997
SO_3694
ABC-type macrolide family export system MFP component.
 
 
 0.990
sapD
ABC-type peptide uptake system ATPase component 1 SapD; Belongs to the ABC transporter superfamily.
 
    
0.906
btuD
ABC-type cobalamin uptake system ATPase component BtuD.
   
0.871
SO_3688
Two component signal transduction system histidine kinase.
 
    0.745
sapC
ABC-type peptide uptake system permease component 2 SapC.
 
    
 0.733
SO_4295
Quinone oxidoreductase family protein.
   
    0.694
artQ
ABC-type arginine uptakesystem permease component ArtQ.
 
 
  
 0.667
modB
ABC-type molybdate uptake system permease component ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.664
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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