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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3700Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase. (461 aa)    
Predicted Functional Partners:
SO_2520
Signalling protein with GGDEF domain.
  
    0.852
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
  
 0.831
SO_1255
Bifunctional diguanylate cyclase/phosphodiesterase.
  
 0.824
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 0.817
SO_4145
Signalling protein with EAL and C2 domains.
  
 0.793
SO_1570
7TM intracellular signalling protein with GGDEF domain.
  
   0.790
SO_2507
Bifunctional diguanylate cyclase/phosphodiesterase.
 
  
 0.776
mshH
Signalling protein with GGDEF and EAL domains MshH.
 
  
 0.776
SO_2039
Signalling protein with EAL domain.
 
  
 0.763
SO_3821
Diguanylate phosphodiesterase.
 
    0.756
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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