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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nupXNucleoside:proton symporter NupX; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. (422 aa)    
Predicted Functional Partners:
SO_3705
5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase.
  
  
 0.781
SO_4014
HAE1 family effllux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  
 0.618
argO
L-arginine efflux tranporter ArgO.
   
  
 0.567
SO_3099
Outer membrane long-chain fatty acid receptor FadL family.
   
  
 0.561
yiaD
Putative outer membrane lipoprotein YiaD.
   
  
 0.533
SO_1821
Outer membrane porin.
   
  
 0.524
SO_4681
Glycosyl transferase family 4.
   
  
 0.522
sdaC
Serine uptake transporter SdaC.
   
  
 0.509
SO_1418
ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
      
 0.508
SO_2427
ArgR-regulated TonB-dependent receptor.
      
 0.454
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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