Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
btuFABC-type cobalamin uptake system substrate-binding component BtuF. (274 aa)    
Predicted Functional Partners:
hmuD
ABC-type hemin uptake system ATPase component HmuD; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.952
btuD
ABC-type cobalamin uptake system ATPase component BtuD.
 
 
 0.946
yadS
Homotrimeric cation channel (TRIC) family protein YadS.
     
 0.944
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.933
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.932
btuB
TonB-dependent vitamin B12 receptor BtuB.
  
  
 0.873
erpA
Iron-sulfur cluster assembly insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG.
      
 0.806
hmuB
ABC-type hemin uptake system substrate-binding component HmuB.
  
   
 0.779
SO_3711
Protein of unknown function DUF2235.
  
    0.741
yjeH
L-leucine transporter YjeH.
      
 0.665
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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