STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuFABC-type cobalamin uptake system substrate-binding component BtuF. (274 aa)    
Predicted Functional Partners:
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.986
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.986
hmuD
ABC-type hemin uptake system ATPase component HmuD; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.980
btuD
ABC-type cobalamin uptake system ATPase component BtuD.
 
 
 0.978
yadS
Homotrimeric cation channel (TRIC) family protein YadS.
     
 0.915
erpA
Iron-sulfur cluster assembly insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG.
   
  
 0.910
hmuB
ABC-type hemin uptake system substrate-binding component HmuB.
  
  
 0.757
SO_3711
Protein of unknown function DUF2235.
  
    0.744
yjeH
L-leucine transporter YjeH.
      
 0.717
hmuZ
FMN binding heme iron utilization protein HmuZ.
  
    0.716
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.