STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
argEN-acetyl-L-ornithine deacetylase ArgE. (275 aa)    
Predicted Functional Partners:
carA
Carbamoyl-phosphate synthase small subunit CarA; Belongs to the CarA family.
      
 0.941
SO_2648
Two component signal transduction system response regulator activating acetyl-CoA synthase LuxR family.
  
   
 0.824
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
 
   
 0.821
carB
Carbamoyl-phosphate synthase large subunit CarB; Belongs to the CarB family.
      
 0.806
artI
ABC-type arginine uptakesystem substrate-binding component ArtI; Belongs to the bacterial solute-binding protein 3 family.
      
 0.802
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase FolK.
      
 0.801
argF
Ornithine carbamoyltransferase ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.775
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase PurC; Belongs to the SAICAR synthetase family.
      
 0.699
panE
2-dehydropantoate 2-reductase PanE; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
      
 0.668
aroQ
3-dehydroquinate dehydratase type II AroQ; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
      
 0.662
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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