STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiFAdenylate cyclase YgiF. (503 aa)    
Predicted Functional Partners:
SO_2914
Protein of unknown function DUF412.
  
    0.639
sixA
Phosphohistidine phosphatase SixA; Belongs to the phosphoglycerate mutase family.
 
     0.636
SO_3770
Phosphate transport accessory protein of unknown function DUF47.
       0.534
ndpA
Nucleoid-associated protein NdpA.
  
  
 0.523
SO_3771
Inorganic phosphate transporter PiT family.
  
    0.469
uspE
Universal stress protein UspE.
  
     0.464
SO_4089
ABC-type efflux system MFP component.
   
    0.443
SO_2872
Membrane protein of unknown function DUF2069.
  
    0.430
pspB
Phage shock protein B PspB.
  
     0.414
rraB
Ribonuclease E inhibitor RraB; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
     0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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