STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3770Phosphate transport accessory protein of unknown function DUF47. (226 aa)    
Predicted Functional Partners:
SO_3771
Inorganic phosphate transporter PiT family.
 
  
 0.984
pitB
Metal ion-phosphate:proton symporter PitB.
 
  
 0.823
SO_3772
SH3 domain protein.
 
    0.625
ybfE
Ribbon-helix-helix protein repressor CopG family YbfE.
   
    0.602
ygiF
Adenylate cyclase YgiF.
       0.589
gspH
T2aSS secretion system pseudopilus protein GspH.
  
     0.492
SO_0541
RNA-metabolizing metallo-beta-lactamase family protein.
   
  
 0.448
SO_3848
Cytoplasmic protein of unknown function.
   
    0.442
pdxH
Pyridoxamine-phosphate oxidase PdxH; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
  
    0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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