STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnCAsparagine-responsive transcriptional regulator AsnC. (153 aa)    
Predicted Functional Partners:
SO_4337
Transcriptional regulator AsnC family.
  
    0.774
SO_4567
Transcriptional regulator AsnC family.
  
     0.773
phhA
Phenylalanine-4-hydroxylase PhhA.
     
 0.633
SO_3586
Glyoxalase family protein.
   
  
 0.597
phhB
Pterin-4-alpha-carbinolamine dehydratase PhhB.
  
  
 0.586
azrR
Superoxide-responsive transcriptional repressor of superoxide stress response AzrR.
   
  
 0.584
tyrR
Sigma54-dependent transcriptional activator of amino acid degradation TyrR.
      
 0.565
aspC
Aspartate aminotransferase AspC.
  
  
 0.538
rluA
23S rRNA pseudouridine746 synthase RluA; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.531
deoR
Nucleoside-responsive transcriptional activator of nucleoside utilization DeoR.
   
  
 0.526
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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