Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3800Surface-associated serine protease; Belongs to the peptidase S8 family. (1215 aa)    
Predicted Functional Partners:
ptrB
Oligopeptidase B PtrB.
      
 0.970
cpdB
Bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3`-nucleotidase CpdB; Belongs to the 5'-nucleotidase family.
   
  
 0.872
ushA
Bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA; Belongs to the 5'-nucleotidase family.
   
  
 0.796
bpfA
Biofilm-promoting protein BpfA.
   
  
 0.778
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
   
 0.547
SO_1075
Dipeptydil peptidase S46 family; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
 
    0.516
SO_3918
Periplasmic peptidase subfamily S1B.
 
     0.483
SO_4069
SAM-dependent methyltransferase type 11.
  
    0.452
asnC
Asparagine-responsive transcriptional regulator AsnC.
       0.440
SO_1224
Esterase/lipase/thioesterase family protein.
  
    0.432
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.