Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_3808Protein of unknown function DUF2804. (343 aa)    
Predicted Functional Partners:
SO_3807
Sterol desaturase family protein.
 
   
 0.797
SO_4189
Protein of unknown function DUF386.
   
 
 0.745
SO_0639
Collagenase.
 
    0.594
ptsG
Phosphotransferase system (PTS) glucose-specific IIBC component PtsG.
   
  
 0.572
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
  
 0.522
fabR
Transcriptional repressor of fatty acid biosynthesis FabR.
  
   
 0.487
SO_4675
Transcriptional regulator TetR family.
  
   
 0.480
SO_2721
4-hydroxybenzoyl-CoA thioesterase family protein.
  
     0.466
hexB
beta-N-acetylhexosaminidase HexB.
  
 
 0.460
SO_2722
4-hydroxybenzoyl-CoA thioesterase family protein.
  
     0.452
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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