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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3811Family 16 outer membrane lipoprotein of unknown function. (188 aa)    
Predicted Functional Partners:
ybfE
Ribbon-helix-helix protein repressor CopG family YbfE.
  
    0.755
ilvM
Acetolactate synthase II small subunit IlvM.
  
     0.727
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
    0.723
SO_0312
Outer membrane porin.
  
    0.717
SO_3060
Outer membrane porin.
  
     0.706
ppiA
Periplasmic peptidyl-prolyl cis-trans isomerase PpiA; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
    0.705
yecM
Protein of unknown function YecM.
  
    0.696
SO_2251
Enzyme of unknown function UPF0227; Belongs to the UPF0227 family.
  
    0.675
SO_0273
Lipoprotein of unknown function DUF1439.
  
    0.651
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.634
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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