STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3828Protein of unknown function DUF819. (415 aa)    
Predicted Functional Partners:
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase KdsA; Belongs to the KdsA family.
       0.697
SO_0749
Phosphoglycerate mutase family protein.
  
     0.674
SO_0017
Bifunctional TolB-family protein/amidohydrolase.
  
     0.633
SO_3830
SirB family protein.
       0.621
SO_3829
Protein of unknown function COG2912.
  
    0.618
SO_0152
Peptidase M14 carboxypeptidase A family.
  
    0.533
SO_0578
Periplasmic metalloprotease.
 
     0.521
yeeZ
NAD-dependent enzyme of unknown function YeeZ.
  
     0.432
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
   
    0.429
SO_1751
ABC-type transport system bifunctional permease and peptidase M1 family component.
  
     0.424
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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