Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3831Acteyltransferase GNAT family. (137 aa)    
Predicted Functional Partners:
SO_0637
Toxin-antitoxin system antidote Rhh family.
   
   0.674
SO_3830
SirB family protein.
 
     0.593
SO_3829
Protein of unknown function COG2912.
       0.538
prpE
propionyl-CoA synthetase PrpE.
  
 
 0.495
acs
Acetyl-coenzyme A synthetase AcsA; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.495
SO_4371
AMP-dependent synthetase and ligase family protein.
  
 
 0.495
SO_1250
SCP-2 sterol transfer family protein.
 
  
 0.475
SO_1815
Histone deacetylase superfamily protein.
  
  
 0.438
gpS
Mu phage tail fiber protein GpS.
  
    0.428
SO_1775
uracil-DNA glycosylase superfamily protein.
  
    0.417
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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