Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3842Secreted low complexity protein. (318 aa)    
Predicted Functional Partners:
SO_3840
RNA polymerase sigma-70 factor ECF subfamily.
 
    0.855
SO_3841
Anti-sigma factor.
  
    0.824
SO_3694
ABC-type macrolide family export system MFP component.
  
    0.703
SO_0757
TPR domain lipoprotein.
  
     0.670
SO_2902
RDD domain protein.
  
     0.651
SO_0306
Outer membrane protein COG4775 family.
  
     0.615
SO_0614
Peptidase S9 family.
  
     0.594
SO_3691
ABC-type macrolide family export system permease component 2.
 
     0.581
SO_0554
Periplasmic protein of unknown function DUF3016.
  
     0.548
SO_1944
2OG-Fe(II) oxygenase family protein.
  
     0.542
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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