STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3848Cytoplasmic protein of unknown function. (166 aa)    
Predicted Functional Partners:
SO_3560
Predicted non-catalytic member of peptidase subfamily M16B.
      
 0.970
SO_4022
Periplasmic peptidase family M16B.
      
 0.970
rseP
RseA degrading zinc metalloprotease RseP.
      
 0.950
ybfE
Ribbon-helix-helix protein repressor CopG family YbfE.
   
    0.694
SO_3847
Cell wall assembly/cell proliferation coordinating protein KNR4-like protein.
  
    0.635
SO_3770
Phosphate transport accessory protein of unknown function DUF47.
   
    0.442
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.