STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3860Periplasmic substrate binding protein family 3. (265 aa)    
Predicted Functional Partners:
ivdG
3-hydroxyacyl-CoA dehydrogenase IvdG.
    
 
 0.970
SO_2813
Oxidoreductase short chain dehydrogenase/reductase family.
    
 
 0.970
fabG
3-oxoacyl-(acyl-carrier-protein) reductase FabG; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.872
fabG-2
3-oxoacyl-(acyl-carrier-protein) reductase FabG.
    
 
 0.810
SO_1260
Extracellular solute-binding protein family 3.
  
    0.771
SO_3481
Periplasmic substrate binding protein family 3.
  
    0.770
SO_0056
ABC-type transport system substrate binding component.
  
     0.760
SO_1503
Periplasmic substrate binding protein family 3.
  
    0.751
SO_3412
Periplasmic solute binding protein.
  
    0.744
SO_0736
Predicted periplasmic protein.
  
    0.690
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.