Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_3866Site-specific recombinase phage integrase family; Belongs to the 'phage' integrase family. (424 aa)    
Predicted Functional Partners:
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
  
    0.761
SO_2902
RDD domain protein.
  
    0.708
SO_1478
TP-methylase family protein.
  
     0.611
wbfC
Polysaccharide synthesis-related protein of unknown function DUF1017 WbfC.
  
     0.601
SO_3884
Site-specific recombinase phage integrase family.
  
  
 0.594
gp48
Mu phage phage morphogenesis protein Gp48.
  
    0.593
SO_1699
Transmembrane transcriptional regulator.
  
     0.571
lys
Mu phage endolysin Lys.
  
     0.530
SO_4006
Uncharacterized protein.
  
     0.524
SO_0852
PilD processed protein.
   
    0.511
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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