STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
assTArylsulfate sulfotransferase AssT. (596 aa)    
Predicted Functional Partners:
wbpQ
Asparagine synthase glutamine-hydrolyzing WbpQ.
      
 0.909
cheY-2
Chemotaxis signal transduction system response regulator CheY.
   
    0.865
tnpA-139
ISSod23 transposase TnpA_ISSod23.
  
   
 0.696
sirB
Sulfurtransferase SirB.
  
    0.650
SO_3871
Thiol:disulfide interchange protein DsbA family.
 
   
 0.606
SO_3873
Nucleoside-specifc outer membrane porin Tsx family.
       0.605
recB
Exodeoxyribonuclease V beta subunit RecB; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination an [...]
   
  
 0.583
sirD
Menaquinol oxidase SirD.
  
     0.577
SO_0760
Ammonium transporter channel family protein.
      
 0.571
ttrS
Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS.
  
     0.515
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.