STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3874Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (323 aa)    
Predicted Functional Partners:
SO_2409
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.774
SO_1607
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.773
SO_3627
Transcriptional repressor of flavocytochrome c TetR family.
   
 
 0.690
SO_4718
Tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family.
   
  
 0.669
ttrR
Two-component system, LuxR family, response regulator TtrR; Thiosulfate/tetrathionate-responsive two component signal transduction system response regulator TtrR.
      
 0.663
SO_4623
Two component signal transduction system response regulator.
      
 0.663
SO_0490
Transmembrane transcriptional regulator CadC family.
      
 0.662
nrdD
Anaerobic ribonucleoside-triphosphate reductase NrdD.
      
 0.661
SO_3297
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.647
SO_1415
Transcriptional repressor of flavocytochrome c TetR family.
    
 
 0.490
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.