Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3888Protein of unknown function DUF1508; Belongs to the UPF0339 family. Duplicated subfamily. (110 aa)    
Predicted Functional Partners:
SO_0033
Peptidoglycan-binding protein.
  
   0.926
gpJ
Mu phage baseplate assembly protein GpJ.
   
 
 0.841
SO_2884
SpoVR family protein.
   
  
 0.826
prkA
Serine protein kinase PrkA.
   
    0.604
ohrA
Peroxiredoxin OhrA.
   
    0.573
SO_3409
OsmC/Ohr family protein.
   
    0.573
sirA
Sulfite reductase octaheme cytochrome c SirA; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process. Required for sulfite respiration under anaerobic growth conditions. Does not contribute to nitrite reduction.
    
   0.530
susB
Alpha-glucosidase SusB.
    
   0.530
SO_2883
Protein of unknown function DUF444; Belongs to the UPF0229 family.
   
    0.518
SO_1175
Protein of unknown function DUF1451.
   
    0.505
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.