STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3894Two component signal transduction system histidine kinase. (543 aa)    
Predicted Functional Partners:
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 0.749
SO_2366
Two component signal transduction system response regulator with DUF3369 and HD domains.
   0.729
SO_4445
Two component signal transduction system hybrid histidine kinase/response regulator.
 
 0.723
torS
Histidine kinase; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS.
 
 0.720
SO_1143
Periplasmic substrate binding protein family 3.
  
    0.697
SO_3481
Periplasmic substrate binding protein family 3.
  
     0.694
SO_2540
Two component signal transduction system response regulator.
  
   0.666
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
0.615
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
 
 0.609
SO_4003
Metal dependent phosphohydrolase with response regulator receiver modulation.
 
   0.604
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.