STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp35Outer membrane porin Omp35. (369 aa)    
Predicted Functional Partners:
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 
 0.700
ompW
Outer membrane protein OmpW.
      
 0.623
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
 
 0.610
ykoF
Thiamin/hydroxymethyl pyrimidine-binding protein YkoF.
  
     0.605
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.601
SO_3905
Predicted outer membrane protein.
  
 
 0.598
SO_2715
Thiamine-regulated TonB-dependent receptor.
  
  
 0.580
SO_3420
Monoheme cytochrome c'.
   
  
 0.579
SO_3514
TonB-dependent chitooligosaccharide receptor.
  
     0.573
mlaA
Phospholipid transport-associated protein MlaA.
   
 
 0.537
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.