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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3905Predicted outer membrane protein. (245 aa)    
Predicted Functional Partners:
SO_3906
Protein of unknown function DUF2333.
 
    0.829
SO_3907
Cytochrome oxidase copper metallochaperone.
  
    0.796
ykoF
Thiamin/hydroxymethyl pyrimidine-binding protein YkoF.
  
     0.726
SO_1420
Metal-induced outer membrane porin IfcO family.
  
 
 0.645
SO_1936
Acteyltransferase GNAT family.
   
    0.608
omp35
Outer membrane porin Omp35.
  
 
 0.598
SO_1557
Outer membrane phosphoporin.
  
 
 0.575
SO_2504
Rhombosortase.
  
     0.572
SO_1829
Putative Zn-dependent protease associated with TonB2 energy transduction system.
  
    0.571
echH
enoyl-CoA hydratase EchH.
       0.557
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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