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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3918Periplasmic peptidase subfamily S1B. (732 aa)    
Predicted Functional Partners:
SO_2223
Subfamily S9C unassigned peptidase.
  
     0.699
SO_1505
Proton:peptide symporter POT family.
  
    0.577
dnaB
Replicative DNA helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
       0.535
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
  
     0.519
SO_4537
Serine peptidase family S9.
  
    0.513
SO_1417
Two component signal transduction system histidine kinase.
   
    0.493
ttrS
Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS.
   
    0.493
SO_3800
Surface-associated serine protease; Belongs to the peptidase S8 family.
 
   
 0.491
SO_1822
TonB-dependent receptor.
  
     0.465
SO_2494
Peptidase family M2.
  
    0.460
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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