STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hydAPeriplasmic [Fe-Fe] hydrogenase large subunit HydA. (410 aa)    
Predicted Functional Partners:
hydB
Periplasmic [Fe-Fe] hydrogenase small subunit HydB.
 
 
 0.991
nuoE
NADH-ubiquinone oxidoreductase subunit E NuoE.
 
 
 0.956
nuoF
NADH-ubiquinone oxidoreductase subunit F NuoF; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
 
 
 
 0.955
hydE
Fe hydrogenase maturation rSAM protein HydE.
 
  
 0.902
hydG
Fe hydrogenase maturation rSAM protein HydG.
 
   
 0.901
gltD
NADPH-dependent glutamate synthase small subunit GltD.
    
 0.893
hydF
Fe hydrogenase maturation GTPase HydF.
 
   
 0.880
fdh
Formate dehydrogenase cytochrome b Fdh.
 
     0.799
SO_0714
Periplasmic monoheme cytochrome c4.
    
   0.741
SO_4506
Iron-sulfur cluster-binding protein.
   
 
 0.691
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.