Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3931Outer membrane protein of unknown function DUF481. (247 aa)    
Predicted Functional Partners:
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.629
priB
Primosomal replication protein N PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
 
     0.595
SO_3124
Dual specificity protein-tyrosine phosphatase.
  
     0.583
SO_0497
Serine/threonine protein kinase.
  
     0.562
SO_0757
TPR domain lipoprotein.
  
     0.504
rpsF
30S ribosomal protein S6 RpsF; Binds together with S18 to 16S ribosomal RNA.
       0.485
SO_1420
Metal-induced outer membrane porin IfcO family.
  
     0.479
rpsR
30S ribosomal protein S18 RpsR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.479
SO_3514
TonB-dependent chitooligosaccharide receptor.
  
     0.461
omp35
Outer membrane porin Omp35.
  
     0.459
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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