STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrbATranscriptional regulator BolA family YrbA; Belongs to the BolA/IbaG family. (83 aa)    
Predicted Functional Partners:
mlaD
ABC-type phospholipid uptake (salvage) system substrate-binding component MlaD.
 
  
 0.949
mlaC
ABC-type phospholipid uptake (salvage) system periplasmic chaperone MlaC.
 
    0.930
mlaE
ABC-type phospholipid uptake (salvage) system permease component MlaE.
 
    0.907
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
  
 0.879
mlaB
ABC-type phospholipid uptake (salvage) system anti-anti-sigma factor MlaB.
  
    0.807
mlaF
ABC-type phospholipid uptake (salvage) system ATPase component MlaF.
  
  
 0.707
grxD
Monothiol glutaredoxin GrxD; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 
 0.659
rpsU
30S ribosomal protein S21 RpsU; Belongs to the bacterial ribosomal protein bS21 family.
   
    0.565
SO_2781
Protein of unknown function DUF17.
  
    0.467
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.