STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3966Magnesium transporter MgtE family; Acts as a magnesium transporter. (454 aa)    
Predicted Functional Partners:
feoB
Ferrous iron transport protein B FeoB; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
      
 0.845
gpP
Mu phage baseplate assembly protein GpP.
   
    0.608
ptsN
Phosphotransferase system (PTS) sugar-specific IIA component PtsN.
 
   
 0.552
ptsO
Phosphotransferase system (PTS) phosphohisitinoprotein-hexose phosphotransferase comonent PtsO.
     
 0.491
yhbH
Sigma-54 modulation protein/ribosome-associated factor YhbH.
       0.473
yhbJ
GlmZ repressor YhbJ; Displays ATPase and GTPase activities.
       0.473
yjeH
L-leucine transporter YjeH.
  
  
 0.431
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.429
SO_3306
Two component signal transduction system hybrid histidine kinase.
   
  
 0.414
kdsD
Arabinose-5-phosphate isomerase KdsD.
       0.408
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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