Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3983Protein of unknown function UPF0231; Belongs to the UPF0231 family. (124 aa)    
Predicted Functional Partners:
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
  
     0.571
pnuR
Transcriptional activator of nicotinamideribose utilization PnuR.
  
   0.568
fimA
P pilus subunit FimA.
  
    0.550
SO_1504
Membrane protein of unknown function DUF3087.
  
    0.517
SO_3984
Metal ion transporter MIT family.
       0.507
syd
SecY binding protein Syd; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.504
crp
cAMP-responsive regulator of catabolite repression Crp.
    
   0.499
deoR
Nucleoside-responsive transcriptional activator of nucleoside utilization DeoR.
    
   0.499
yecM
Protein of unknown function YecM.
  
     0.498
O
Lambda phage replication protein O.
  
     0.441
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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