Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
dpp4Periplasmic dipeptidylpeptidase IV Dpp4. (763 aa)    
Predicted Functional Partners:
SO_3539
Peptidase M28D family.
  
     0.658
SO_0152
Peptidase M14 carboxypeptidase A family.
 
     0.649
SO_2494
Peptidase family M2.
 
     0.634
SO_2766
Peptidase M28A family.
  
     0.634
SO_1822
TonB-dependent receptor.
  
     0.631
SO_2198
Peptidase M28 family.
  
     0.627
SO_1997
Cold-active zinc metallopeptidase M1 family.
  
     0.545
SO_1075
Dipeptydil peptidase S46 family; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.534
SO_1561
Cytoplasmic zinc metallopeptidase M1 family.
  
     0.534
susB
Alpha-glucosidase SusB.
  
     0.534
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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