STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4011Protein of unknown function DUF3581. (233 aa)    
Predicted Functional Partners:
SO_2297
Uncharacterized protein.
  
     0.500
SO_4012
Predicted transmembrane protein.
       0.494
SO_1759
Branched-chain amino acid efflux pump permease component 2 AzlD family.
  
    0.469
SO_2113
Outer membrane protein with carboxy terminal DUF490 domain.
  
    0.452
SO_4562
Tellurium resistance terB-like protein subgroup 2.
 
     0.448
SO_0539
Transport protein MFS superfamily.
  
    0.443
hsdS
Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS.
   
    0.400
SO_1401
RCC1/BLIP-II superfamily protein.
  
     0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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