STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4013TPR repeat domain protein. (607 aa)    
Predicted Functional Partners:
SO_3611
AAA ATPase family protein.
   
 0.531
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
   
 0.531
SO_4015
HAE1 family effllux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.528
SO_4014
HAE1 family effllux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.527
SO_4012
Predicted transmembrane protein.
       0.506
aguB
N-carbamoyl-putrescine amidase AguB.
   
    0.418
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.