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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtLChloramphenicol resistance protein MdtL. (396 aa)    
Predicted Functional Partners:
yidZ
Transcriptional regulator YidZ; Belongs to the LysR transcriptional regulatory family.
 
    0.891
mrdA
Penicillin-binding protein 2 MrdA; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
      
 0.726
hsdM
Type I restriction-modification system N6-adenine DNA methyltransferase HsdM.
   
  
 0.718
mrcB
Penicillin-binding protein 1B MrcB; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
   
  
 0.710
hsdM-2
Type I restriction-modification system N6-adenine DNA methyltransferase HsdM.
   
  
 0.708
znuB
ABC-type zinc uptake system permease component ZnuB.
   
  
 0.615
yqfA
Channel protein hemolysin III family subfamily YqfA.
   
  
 0.517
corC
Magnesium and cobalt efflux protein CorC.
      
 0.485
SO_4022
Periplasmic peptidase family M16B.
  
    0.449
SO_1988
SAM-dependent methyltransferase type 11.
   
    0.429
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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