deaD protein (Shewanella oneidensis) - STRING interaction network

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deaD

ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (623 aa)

Predicted Functional Partners:

yciO

0.992

SO_2380

0.918

recQ

0.918

rpoZ

0.849

cspD

0.848

cspA

0.770

exaC

0.733

pnpA

0.699

rnr

0.618

rplC

0.566

Your Current Organism:

Shewanella oneidensis

NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SO_2380	deaD	SO_2380	SO_4034	ATP-dependent DNA helicase RecQ family.	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.918
SO_2380	recQ	SO_2380	SO_4241	ATP-dependent DNA helicase RecQ family.	ATP-dependent DNA helicase RecQ.	0.920
cspA	deaD	SO_2787	SO_4034	Cold shock protein CspA.	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.770
cspA	pnpA	SO_2787	SO_1209	Cold shock protein CspA.	Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.702
cspA	rnr	SO_2787	SO_3935	Cold shock protein CspA.	3'-5' exoribonuclease R Rnr; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.736
cspA	rplC	SO_2787	SO_0231	Cold shock protein CspA.	50S ribosomal protein L3 RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.502
cspD	deaD	SO_2628	SO_4034	DNA-binding cold shock protein CspD.	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.848
cspD	rplC	SO_2628	SO_0231	DNA-binding cold shock protein CspD.	50S ribosomal protein L3 RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.502
deaD	SO_2380	SO_4034	SO_2380	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	ATP-dependent DNA helicase RecQ family.	0.918
deaD	cspA	SO_4034	SO_2787	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Cold shock protein CspA.	0.770
deaD	cspD	SO_4034	SO_2628	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	DNA-binding cold shock protein CspD.	0.848
deaD	exaC	SO_4034	SO_4480	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	NAD+-dependent acetaldehyde dehydrogenase ExaC; Belongs to the aldehyde dehydrogenase family.	0.733
deaD	pnpA	SO_4034	SO_1209	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.699
deaD	recQ	SO_4034	SO_4241	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	ATP-dependent DNA helicase RecQ.	0.918
deaD	rnr	SO_4034	SO_3935	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	3'-5' exoribonuclease R Rnr; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.618
deaD	rplC	SO_4034	SO_0231	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	50S ribosomal protein L3 RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.566
deaD	rpoZ	SO_4034	SO_0360	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	DNA-directed RNA polymerase omega subunit RpoZ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.849
deaD	yciO	SO_4034	SO_3016	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	RNA binding protein YciO; Belongs to the SUA5 family.	0.992
exaC	deaD	SO_4480	SO_4034	NAD+-dependent acetaldehyde dehydrogenase ExaC; Belongs to the aldehyde dehydrogenase family.	ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.733
pnpA	cspA	SO_1209	SO_2787	Polyribonucleotide nucleotidyltransferase PnpA; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Cold shock protein CspA.	0.702

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