STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4048Diheme cytochrome c4. (208 aa)    
Predicted Functional Partners:
SO_4047
SoxA-like diheme cytochrome c.
  
 0.995
petC
Ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC.
 
 
 0.961
petA
Ubiquinol-cytochrome c reductase FeS subunit PetA; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.932
ccoO
Cbb3-type cytochrome c oxidase subunit II CcoO.
 
 
 0.923
ccoN
Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.902
scyA
Periplasmic monoheme cytochrome c5 ScyA.
 
 
 
 0.869
ccoP
Cbb3-type cytochrome c oxidase subunit III CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.836
petB
Ubiquinol-cytochrome c reductase cytochrome b subunit PetB; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.829
SO_0717
Periplasmic monoheme cytochrome c4.
  
     0.773
SO_0714
Periplasmic monoheme cytochrome c4.
 
     0.772
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.