STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4051Putative DUF2955 domain transport system MFP component. (357 aa)    
Predicted Functional Partners:
slyA
Transcriptional regulator SlyA.
 
  
 0.953
macB
ABC-type macrolide export system bifunctional ATPase and permease component MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.838
macC
ABC-type macrolide export system secretin component MacC.
 
 
 0.780
SO_4050
Putative DUF2955 domain transport system permease component.
  
    0.776
rmrB
Multidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily.
 
 0.732
tolC
Global secretion system secretin TolC.
 
 
 0.662
kil
Mu phage protein Kil.
   
    0.608
SO_0518
Heavy metal efflux pump secretin component CzcC family.
  
 
 0.595
aggA
Type I protein secretion system secretin component AggA.
  
 
 0.595
SO_4090
ABC-type efflux system secretin component.
  
 
 0.594
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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